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under your rear seat, there are modules and lots of fuses, all of those are good? If those are all good, than there is some f@ckup with OBC and on the way to OBC, because all those things work through OBC.
It is most likely one or both of the relays in the General module - I had to remove the module from my E46 and have a friend (electronics expert) solder in two new relays. I then went through the key re-programming exercise (check the web for this procedure) I am sure the E39 is the same. I would check this website and email the owner for more specific details on the relays and module repair - incidentally - I bought the relays from him.