Hey guys, thanks for the help but I figured out the problem. I was at Charlie's house today working on it with him. The problem is that my SONY head unit has some odd protections and the original BMW amps cause lots of problems with SONY decks. I just bypassed the amp, rewired all the speakers back to the head unit, man it took a while. Anyways, now everything works just fine, the wiring was hard to figure out though.
'02 C32 AMG / '07 C280 / '07 CLS550 / '15 JKU Rubicon