Naw it'll be fine. I disconnected mine in both of my cars because the display is messed up.
It'll run fine.
'94 Supercharged E36 325is (150,000 original km's)
-Vortech V9 G-Trim @ ~10psi w/ BOV
-255LPH Walbro fuel pump
-TEIN SS Coilovers w/ Pillowball mounts
-Keskin KT1 17x8.5 & 17x10
-Remus full catback
-Authentic Rieger Infinity I body kit
-SMT6 EMS (Untuned)